PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011458P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YC | ||||||||
Protein Properties | Length: 141aa MW: 15711 Da PI: 9.7042 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.9 | 8.5e-17 | 6 | 91 | 13 | 97 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97 + + + e+P r+kki+k d+d+ ++ +ea l+s a elf+ l+ +s a e+kr+t+k i av+r i dfl+d p MELO3C011458P1 6 SGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHrSISDFLLDSLP 91 55566779***************************************************************9862689*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.6E-22 | 11 | 77 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-18 | 12 | 91 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEEEESGEAI RPEFPTGRVK KIMKLDKDIG KVNSEALFLV SCATELFLKL LAEKSAEVAA 60 EKKRKTVKLE HIRMAVKRHR SISDFLLDSL PLPSQPSDAS AKDENRIRAV VDKVAPAGTR 120 RIDDFFRRPT KTTSAETNES * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445504.1 | 1e-96 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A1S3BDL4 | 3e-95 | A0A1S3BDL4_CUCME; dr1-associated corepressor | ||||
STRING | XP_008445504.1 | 5e-96 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 4e-30 | nuclear factor Y, subunit C13 |