PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011281P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 445aa    MW: 48956.8 Da    PI: 5.5523
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011281P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-083814142154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  MELO3C011281P1 381 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 414
                     469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-18186230IPR005540KNOX1
PfamPF037901.2E-16188228IPR005540KNOX1
SMARTSM012561.1E-25241297IPR005541KNOX2
PfamPF037911.1E-18248296IPR005541KNOX2
PROSITE profilePS5007111.677355418IPR001356Homeobox domain
SMARTSM003895.9E-11357422IPR001356Homeobox domain
SuperFamilySSF466899.41E-16357421IPR009057Homeodomain-like
CDDcd000861.17E-11358419No hitNo description
Gene3DG3DSA:1.10.10.604.3E-25362419IPR009057Homeodomain-like
PfamPF059201.0E-17375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAFRNQLSRE LPLHYANQPQ QQQSEQPLSD NTLRSILSDQ LTDHSTAGDG SKSENPLQSA  60
PNWLNSALLR NQTPHSHYSG ETTTTAADNV NTDFLNLHTT APNSSGQWLS RPILHRNQSD  120
VIDDVADAAD AMIGATATLS RESDDLKNNS SGGGGEGVNN SDDVAVDSDC NEGARGGEAA  180
MNWQNARFKA EILAHPLYEQ LLSAHVACLR IATPVDQLPR IDSQLSRSQN VAAKYSSLGN  240
GSQSIVSNGK ELDQFMTHYV LLLCSFKEQL QQHVRVHAME AVYACWEIEQ SLQSLTGVSP  300
GVGTGATMSD DDEDQIDSDA NLFDGSLEGH DTMGFGPLSQ QRGYKEKIVD IREEILRKRR  360
AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWHTNP  420
STSTNLKTKR KRSNAGEATG NDHP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411431RKRNWHTNPSTSTNLKTKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138713.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041361e-172KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3BC760.0A0A1S3BC76_CUCME; LOW QUALITY PROTEIN: homeobox protein knotted-1-like 3
STRINGXP_004138713.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-149KNOTTED1-like homeobox gene 3