PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011110P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 341aa    MW: 38531.4 Da    PI: 4.5642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011110P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12176219654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A+eY+k+L
  MELO3C011110P1 176 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYMKEL 219
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-4177223No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16177242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00111265329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELDEHVFLE ELMALRRDPN WEAIPNEITD LCSNAWPFDY CFDQTTLNFP PNSSSQPLST  60
HNLHEFYNPL PNEFSVPQIP DSAFTTMEVA AAPLPFQPEH PNVEREEEEE EEQLGFLADE  120
IQNMETVQVE SSCKMEPNQS PEELQVFNIG TCSSSSSSLE RKNRAKKLQG QPSKNLMAER  180
RRRKRLNDRL SMLRSIVPKI SKMDRTAILA DAIEYMKELL EKIGNLQSEV EGSNSRMNSL  240
KNTKPSEFVV RNSPKFEVES RNGETRIEIC CGGKPGLVLS TVNTIEALGL EIQQCVISCF  300
NDFALQATCS SQELKQRREV KAEELKEALF RNAGYGGSCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444964.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL11e-75BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S3BBK70.0A0A1S3BBK7_CUCME; transcription factor bHLH93-like
STRINGXP_008444964.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-77beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]