PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011094P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 213aa    MW: 23805.1 Da    PI: 8.7814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011094P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-132773354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+ErrRR+riNs +++ r+llP+      +K +Ka+ L ++v  +k+L
  MELO3C011094P1 27 RSHKEAERRRRQRINSHLATFRTLLPNT-----TKTDKASLLAEVVSQVKEL 73
                    78*************************9.....8**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.5992473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-102773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-92775No hitNo description
SuperFamilySSF474597.33E-132785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-112776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-103079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTAGCSIVD NAADSPKDEK KSTEASRSHK EAERRRRQRI NSHLATFRTL LPNTTKTDKA  60
SLLAEVVSQV KELRRRATEV ARRSTEQSGG GEMVSWPFPS EEDEATLCYC DNENKVMRAT  120
VCCDERSSLN RDMMQAIRSV QVRVVRAETM TLGGRTKNVV VMEWSGGGRE REEEFMGLRR  180
ALKAVVENRA QSVLGNKRAR ACCPMEDTIL MC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444933.11e-154PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S3BBI71e-153A0A1S3BBI7_CUCME; transcription factor bHLH30-like
STRINGXP_008444933.11e-154(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.17e-33basic helix-loop-helix 32