PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011079P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 294aa    MW: 31694.2 Da    PI: 7.052
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011079P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.8e-16203239135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  MELO3C011079P1 203 CTNCGISSmsTPMMRRGPSGPRSLCNACGLFWANRGT 239
                     ******9999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.24568103IPR010399Tify domain
SMARTSM009791.6E-1168103IPR010399Tify domain
PfamPF062001.2E-1171102IPR010399Tify domain
PROSITE profilePS5101712.491135177IPR010402CCT domain
PfamPF062031.7E-15135177IPR010402CCT domain
PROSITE profilePS5011410.765197256IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15197250IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11197246No hitNo description
Gene3DG3DSA:3.30.50.108.1E-16201243IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.24E-14202249No hitNo description
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
PfamPF003204.0E-14203239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYARAQPLTM GDQIADCGDS GEPLDNRLVR YGAHSLEDGG GVGGMVEVLN PDAVYVPAGD  60
GSDLAVQRSD GSNQLTLSFR GQVYLFDAVS PEKVQAVLLL LGGCELSSGQ QSVDLVNPNQ  120
RNALDFPGRS SQPQRAASLN RFRQKRKERC FEKKVRYGVR QEVALRMQRN KGQFTSSKKS  180
DGSYSHGNVS ELGQDESPPE TSCTNCGISS MSTPMMRRGP SGPRSLCNAC GLFWANRGTL  240
RDLPKRSQDH PVTPAEQCES DGGKDLDCRH GNHAPSNLVS FSNGDNSALM AEH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-155LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-155LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444911.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH67e-89GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3BBG80.0A0A1S3BBG8_CUCME; GATA transcription factor 25
STRINGXP_008444911.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.35e-83GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]