PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011078P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 267aa MW: 29243 Da PI: 8.5962 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.3e-16 | 204 | 240 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ MELO3C011078P3 204 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 240 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 65 | 100 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 65 | 100 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-10 | 68 | 99 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 133 | 175 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.5E-15 | 133 | 174 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.524 | 198 | 246 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.9E-8 | 198 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-11 | 199 | 249 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.9E-15 | 202 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.00E-15 | 203 | 247 | No hit | No description |
Pfam | PF00320 | 4.6E-14 | 204 | 240 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 204 | 231 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAAANPQPLQ ARPFQEHVQV PSMMGDDDGE YEDGGGGGGG GDVMDDVEEA HMTSVSVANH 60 GGLVMASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG RDVPAGVPTM EVPYDHNNRG 120 MVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASLKESSG 180 ASSWESAHSC LQDGTRSETV LRKCQHCGVS ENNTPAMRRG PAGPRTLCNA CGLMWANKGT 240 LRDLSKGGRN VSLDHMEPVR NIKERY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-151 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-151 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444908.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_008444909.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_008444910.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X2 | ||||
Swissprot | Q8GXL7 | 1e-70 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A1S3BAZ6 | 0.0 | A0A1S3BAZ6_CUCME; GATA transcription factor 24-like isoform X1 | ||||
TrEMBL | A0A1S3BBG6 | 0.0 | A0A1S3BBG6_CUCME; GATA transcription factor 24-like isoform X2 | ||||
STRING | XP_008444908.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-68 | ZIM-like 1 |
Publications ? help Back to Top | |||
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