PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011052P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 285aa    MW: 32426.8 Da    PI: 8.9459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011052P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13117168155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  MELO3C011052P2 117 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 168
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.84E-14115172No hitNo description
PROSITE profilePS5088815.288116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14116172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-17116182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMALETVVYP QDTFSYVCRD FCSYAGGPPW GTYDYAFQFE EQKAFLGLIE NQTHDQKWEP  60
SPDESSINHQ LPGGGPLYPP LELEPTPTPP PPPPPTTGRR KRRRTRSTKN KEEIENQRMT  120
HIAVERNRRK QMNEYLAVLR SLMPSSYVQR GDQASIIGGA INFVKELEQQ LQFIKVHKEQ  180
TDTSPFADFF SFPQYSTRAT TQSKNNNSPH DSSIAHAQWP AGDIEVTMVD THANLKILSQ  240
KRPRQLLKMV AGFQSLRLTI LHLNVTTSDQ MVLYSLSIKV VIFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
299104RKRRRT
3117128RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444872.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T41e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3BBD60.0A0A1S3BBD6_CUCME; transcription factor bHLH96
STRINGXP_008444872.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]