PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C010880P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 231aa MW: 25600.3 Da PI: 10.4057

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C010880P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.2	9.9e-16	127	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f++ h +++ ++ +tl de+g ++ + rk++ l++GWk+F+ a++L +gD v+F++++ ++++v+ MELO3C010880P1 127 FIKSMLQSHVSGGFWLGLPSHFCKIH-LPN-RDGVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHKLADGDAVIFQFIK--PTTCKVH 213 89*******************666.443.4458***********656665....*********************886..6677899 PP EE-S CS B3 96 vfrk 99 ++r+ MELO3C010880P1 214 ILRA 217 9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-24	121	217	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.4E-20	121	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.03E-26	125	216	No hit	No description
SMART	SM01019	1.5E-21	127	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.674	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-13	127	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGIANLSYEE CRRKRLEENK KRMEALNLPL LSQALIDSSP SKSSPSKLTK PRVTQKQLVV 60 VRRSSRVAKQ SAPVYAEVVI NRVVIPRRIS KARDLSNRVY ASDGARKRAF ERAEQLQSGL 120 EPNYPSFIKS MLQSHVSGGF WLGLPSHFCK IHLPNRDGVM TLIDEDGDEY PTIYLARKTG 180 LSGGWKGFAV AHKLADGDAV IFQFIKPTTC KVHILRAANS STEDSDSNSS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-113	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-113	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444633.1	1e-171	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	7e-73	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1S3BAR2	1e-170	A0A1S3BAR2_CUCME; B3 domain-containing protein At5g42700-like
STRING	XP_008444633.1	1e-170	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-70	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]