PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010848P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 234aa    MW: 26038.3 Da    PI: 7.2313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010848P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08142182954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++++P       +K++ a++L +A++Y+k L
  MELO3C010848P1 142 ARHRRERISERIRILQRIVPGG-----TKMDTASMLDEAIHYLKFL 182
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14137192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6143182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.58E-6156187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDIEEMGKFG ENFEYNEIAT TLDFGFGSSN IASTSHLIFP SFNNIPPTTL SMNNATHPVA  60
PPSFPPYSAA ARWRSHFPAT RNSGTTGEEE VEGSESESMG GGMREMIYRI AAMQPIEIDP  120
EAVKAPKRRN VKISKDPQSV AARHRRERIS ERIRILQRIV PGGTKMDTAS MLDEAIHYLK  180
FLKNQLHSLQ IAAASSSSSA YVFPTVAHYN NKQHLIHFPQ FPTHPHHHLD QDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444609.11e-174PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S3BA851e-172A0A1S3BA85_CUCME; transcription factor HEC3-like
STRINGXP_008444609.11e-173(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-35bHLH family protein