PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010811P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 326aa    MW: 35824.6 Da    PI: 4.9224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010811P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-102492891055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  MELO3C010811P1 249 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 289
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-14239301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12244299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-12248293No hitNo description
PfamPF000107.8E-8249289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEALGVFSDG EWESFAAMFS SEEINQTHIP MTNCCSSELH QLPNNGGSSS SWFYSLDAFV  60
PNLQSYCKQD IRSCSSASVL IPNSSDFFMP IDERNFGSEF FSDVLIEEVD NALAVDAEGD  120
DSGMGRLIEN NVSQSNHPPP SPLLDSAGAG NKPIALKRKV NNGDISDNQK KKTRITSHGQ  180
RKKKTEDKRR GESAEEEGQS SISYNSDQEE NGSEEANGGG SGATSDGGIN RKSRASRGSA  240
TDPQSLYARK RRERINERLR ILQKLVPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDEM  300
WMFAPLAYNG MDIGLQHNLS PFLSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169182KKKTRITSHGQRKK
2169183KKKTRITSHGQRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444563.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A1S3BAK30.0A0A1S3BAK3_CUCME; putative transcription factor bHLH086
STRINGXP_008444563.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3140122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-39root hair defective 6-like 4