PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010786P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 673aa    MW: 71036 Da    PI: 7.4998
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010786P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92e-24263307145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  MELO3C010786P1 263 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 307
                     79****************************************985 PP
2QLQ59.59.4e-21194229237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  MELO3C010786P1 194 PFTPSQWMELEQQALIYKYITANVPVPSYLLIPIRK 229
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.3E-12193229IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.702194229IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-14194228IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663263307IPR014977WRC domain
PfamPF088798.2E-21264306IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDFGVVGLDG GVVVVGSSDT SGFSSLAAAA ASSDAETTKQ KWYESVSGYI HKQERSASVA  60
APQEQDDDGG GGGGAGDDED LRASKLLKTS DHLSSSTSSS TKGFLFPHRH SATLLRSTNS  120
SPFFLSDSNQ NHHHQMLCFS SPKTESFPLD KTSSLSAVSP NLYHSSAPRN AGCNYGGLNG  180
GSMHGSAFIG VRAPFTPSQW MELEQQALIY KYITANVPVP SYLLIPIRKA IESAGFSAFS  240
GGFLRPGAVG WGSFNMGFSN SSDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR  300
SRKPVEGQAG HSHSVAGASN ITTATAATKL ISSSASTAAV PCNGSPNSLS FANQHFKNLH  360
RPGSHPPPSS AAAQINRMLI TNKENGGIGL LDSATTSGLS VLSPSIDIKQ SKQLPFAIQK  420
QQNPFEESPR VAEFGLVSSD FLLGSSQKSS SLMNYRGFNP SEGIASTQES AESHHSLRQF  480
FNNWPKNQSD SSSVSWSNSN LDPQSDRTQL SISIPMATSD FRSSTSSPAN EKLTLSPLKS  540
AQELDPIQMG LGVGNVMDEP NSRQANWIPI SWESSMGGPL GEVLNSTNNN GGDSKSSSML  600
NLMTEGWDNS PSLGSSPTGV LQKTAFGSFS NSSTGSSPRT ENNKTHEGGG GGGGSSQCSD  660
RFVNSSSSLP SV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444523.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLA0A1S3BBC20.0A0A1S3BBC2_CUCME; growth-regulating factor 6-like
STRINGXP_008444523.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.19e-95growth-regulating factor 1