PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010759P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 358aa    MW: 40547.7 Da    PI: 8.1421
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010759P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.7e-092873251854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  MELO3C010759P1 287 MFQNflHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVR 325
                     6887779******************************88 PP
2BELL62.11.2e-20162226570
            BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                     + +kk++Ll+ll+ +d+rY ++ ++++tv s+F+a+++l++ +++t+  l++i+  +++L+++i++
  MELO3C010759P1 162 VDAKKSHLLTLLQLIDERYTRCLDEIHTVTSAFHAATDLDP-RLHTRYTLQTITSVYKNLREKITS 226
                     679**************************************.**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-1284226IPR006563POX domain
PfamPF075265.5E-2190225IPR006563POX domain
PROSITE profilePS5007111.175266329IPR001356Homeobox domain
CDDcd000868.07E-10269330No hitNo description
SMARTSM003898.7E-5269333IPR001356Homeobox domain
SuperFamilySSF466891.58E-15270338IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-26272335IPR009057Homeodomain-like
PfamPF059201.4E-14286325IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEHLHQNGWM SSNTMNSKLW NELSLSLATT EPVLSGGTDF LDQYSQLTFS GATQPCLNST  60
ELASNLNSGS SRDLSLSYGC GSSVRLSRAI AGSRYLSIIQ DVLSQIASYP LESSDQVSHS  120
TTVGGFVPFS SSSLDDATFE YGSDITGRYS SQMEPEWQNL SVDAKKSHLL TLLQLIDERY  180
TRCLDEIHTV TSAFHAATDL DPRLHTRYTL QTITSVYKNL REKITSCIFA IGKHSNAVCT  240
KEKEKSFEAT FLQKQWALQQ LKRKDNQLWR PQRGLPEKSV SVLRAWMFQN FLHPYPKDTE  300
KHLLAVKSGL TRNQVSNWFI NARVRLWKPM IEEMYAEMSR RKSSQNEEGI ERIHCPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-14275333563Homeobox protein Meis2
4xrm_B1e-14275333563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444475.10.0PREDICTED: homeobox protein ATH1
RefseqXP_008444476.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900072.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900073.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900074.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900075.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900076.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900077.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900078.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900079.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-100ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A1S4DVT00.0A0A1S4DVT0_CUCME; homeobox protein ATH1
STRINGXP_008444474.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-103homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]