PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010752P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21546.8 Da PI: 7.8456 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.1 | 2.4e-32 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+ +C+lapyfpa++ ++f+nv+klFG++nvlk+l+ l++++r +a++++++eA++ra d G++++i+klq++++ l+a+ MELO3C010752P1 33 ACAACKFHRRKCSVECPLAPYFPANRLRDFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIALLEAQHR 127 7*****************************************************************************************99987 PP DUF260 96 llke 99 l+ + MELO3C010752P1 128 LILH 131 7655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.355 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-32 | 33 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MNIRQDCTET SADGGEVKDI NFPTKIQAAA AAACAACKFH RRKCSVECPL APYFPANRLR 60 DFENVRKLFG VKNVLKILAG LEPDNRFKAV ECMIFEANCR AIDLAGGCYK IISKLQSEIA 120 LLEAQHRLIL HQLQISRQTA AAISQRGAIR SEFDSDCKHG LTSLLLDCDC SEDWIRKEYF 180 NLNEASFSKA LTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-20 | 29 | 125 | 7 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-20 | 29 | 125 | 7 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444461.1 | 1e-141 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A1S3B9X0 | 1e-140 | A0A1S3B9X0_CUCME; LOB domain-containing protein 22-like | ||||
STRING | XP_008444461.1 | 1e-141 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-25 | LOB domain-containing protein 22 |