PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010748P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 368aa    MW: 41697.6 Da    PI: 4.8893
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010748P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.4e-34491412103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+ +++++sws+  nsf+v+d ++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++
  MELO3C010748P1  49 FLTKTFEMVEDPLTDSIVSWSRARNSFIVWDYHKFSSTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRNLLRT 134
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  MELO3C010748P1 135 IKRRRHS 141
                     ***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3645138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5745138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3245138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDELKVKPEE SLVATATATA TASSSSSSSS SSVTPQPISG LHDVGPPPFL TKTFEMVEDP  60
LTDSIVSWSR ARNSFIVWDY HKFSSTLLPR YFKHSNFSSF IRQLNTYGFR KVDPDRWEFA  120
NEGFLGGQRN LLRTIKRRRH SHQSIQHHGG TCVELGQFGL EADLERLRRD RSTLMAELVR  180
LRQQHQSSRE QIMAMEDRLE KAESKQKQIM TFLSKALKNP SFVQKFINSN QGRELRGVEI  240
GRKRRLTASP SVENLQDENV PVAVKQEELE TSEPDIETLL TVNFEDESSI EIADPVSDMG  300
HSVHEESGIF SQFWAEDFVA VHPEEPTIVV NQSDIDVEVE DLIAEPPDWT EDLQELVDQM  360
GILRSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-244713827129Heat shock factor protein 1
5d5v_B5e-244713827129Heat shock factor protein 1
5d5v_D5e-244713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900029.10.0PREDICTED: heat stress transcription factor A-2
SwissprotP411521e-119HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1S4DVL90.0A0A1S4DVL9_CUCME; heat stress transcription factor A-2
STRINGXP_008444455.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-107heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]