PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010714P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 585aa MW: 66158.9 Da PI: 5.8368 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77 | 2.4e-24 | 198 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl MELO3C010714P1 198 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 82.4 | 1.4e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++eal ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G MELO3C010714P1 19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 111 89*********************.***************999999**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ MELO3C010714P1 112 ACDYLLKPIRMKELRN 127 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.8E-147 | 1 | 522 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-44 | 16 | 140 | No hit | No description |
SuperFamily | SSF52172 | 7.97E-36 | 16 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.9E-32 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.657 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-24 | 19 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.99E-30 | 20 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-28 | 196 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-17 | 196 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-21 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 200 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MENGFSSPRS DAFPIGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR EALSLLRERK 60 DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI 120 RMKELRNIWQ HVLRKKIQEG RDIEGHDVIE GIHILRNVAD RYDDSQFLRG EELFSVRKRK 180 DIDKHEDKDF CDTSSAKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE 240 NVASHLQKYR LYLSRLQKEN DPKACFVVGM KHKDPCSKDG DGNFGLHSSL AVPQNDVTNS 300 SFSFSGDNFL LQNVDSIGCE VDRKRVVQEH TSEPKRAAGR SVPEPIKARC TQMKFNNTIH 360 PVEPEGKFPA FDPSNRSCYP WVEAPEIKFK QESKPIVHLE GDFNQFPPTV PPHQVQMDQL 420 QSISSISSGR SATEKDIASS IESKPPYSEN CSQQRVHLNL PKTPTDSFAG KAKSFNEMND 480 HFDPNSTTTT PLGKNQNFNP SCISTDLGSG LPFATIDEDL QGFLLQDGCY PKNLEHQIIE 540 FPDYGDPGIF TEVPTHLYDA MRFGYDYSYD PTEYPVIDEG LFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 194 | 256 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444405.1 | 0.0 | PREDICTED: two-component response regulator ARR11 | ||||
TrEMBL | A0A1S3BB23 | 0.0 | A0A1S3BB23_CUCME; Two-component response regulator | ||||
STRING | XP_008444405.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-128 | response regulator 11 |