PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010678P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 319aa    MW: 36240.1 Da    PI: 5.0395
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010678P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-092602932255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp+++++  LA+ +gL+ +q+ +WF N+R ++
  MELO3C010678P1 260 WPYPTEADKVALAETTGLDPKQINNWFINQRKRH 293
                     69*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-2275119IPR005540KNOX1
PfamPF037901.4E-2178118IPR005540KNOX1
SMARTSM012561.6E-20125176IPR005541KNOX2
PfamPF037912.6E-21129174IPR005541KNOX2
SMARTSM011885.3E-4213234IPR005539ELK domain
PfamPF037895.0E-7214234IPR005539ELK domain
PROSITE profilePS5007112.406233296IPR001356Homeobox domain
SuperFamilySSF466891.67E-18234303IPR009057Homeodomain-like
SMARTSM003895.9E-12235300IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-27238297IPR009057Homeodomain-like
CDDcd000861.54E-11247297No hitNo description
PfamPF059209.6E-17253292IPR008422Homeobox KN domain
PROSITE patternPS000270271294IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDENMYGMPK SFLPSDNLIL PLDYQTLLPS TNLRRDRIPM FGSHELVSRP TSSMSQAEPP  60
STTLDFSLPE EDVLSVTKAK IVSHPIYPRL LHAYIDCQKV GAPPEIACLL EEIRRENDSH  120
EQNAISTCFG ADPELDEFME AYCDMLMKYK SDLSRPFHEA FSFLNNIQLQ LCNLGAGAST  180
TTPSNEDAMS SDDELNCGER ELQDGQMRLE DKGLKDMLLS RFGGHIGTLK LEFSKKKKKG  240
KLPKEGRKVL LEWWDVHYKW PYPTEADKVA LAETTGLDPK QINNWFINQR KRHWKPSESM  300
QFGNIDNTAE QFSARLDS*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-166LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-166LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444355.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-118KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1S3BA770.0A0A1S3BA77_CUCME; homeobox protein knotted-1-like 6
STRINGXP_008444355.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-109KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]