PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010521P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 952aa    MW: 105293 Da    PI: 6.7013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010521P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06547567526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr++ + G C+ Gd+CkF+H+
  MELO3C010521P1 547 YCRHYVK-GRCQEGDKCKFSHD 567
                     6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.77542569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6542567IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4543568IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4546567IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4548567IPR000571Zinc finger, CCCH-type
SMARTSM003560.033571597IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.817571598IPR000571Zinc finger, CCCH-type
SMARTSM003560.036599623IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5600629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291601624IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4602622IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MEETSKLVES KLLFPPHRRL SETYRTLVRI LSPFCENADV SLATEFDPQQ LRAAYSSHMR  60
QATVEPSWQE VIKDSVRVET GDLAIEKATV VEDKHAQDFK VMDFIRDMPI VERSDNVSDQ  120
RRTLKVRSED NHCVYEENRT NEAEAEHIVE GNKMLFDDNS CSNVRTSIQT NGGNDQISPE  180
NLREEIVEHQ HVMEEEDAGS IVQKLSGTLL SLDGHMNQEA SKQEEGNQEN ILKDMHKLTE  240
NCPKELKSES IVCKPDLERE KSYISSIVEV MDVDDKEQCS ENDFGPNPSS MNKETPSGIY  300
ELCKNSEDKA ITVDIGTSKV EHTMLPKAME MDKYMTENGD IEEGEICGET NEISEDPAVL  360
NEKVFGIQIS EETLNRSKLP FIQADEEANK PVSLFFDKAV YASHENREKF KSKENKSGMD  420
ACKYKSIVSE NRVTSTNEDQ SGFILEERGY TEKDSGIKKD IDSFTARFSN QVLCSQVPEE  480
HATGRKETVS VEKETGVCNK KKRGPLSEGK KERKKIQKRK KRAEKNRKAG VKRLKLHPVT  540
VPKPVVYCRH YVKGRCQEGD KCKFSHDTTP LTKSTPCSYF ARHSCMKGGD CPFDHQLSKY  600
SCTNFVSNGS CPRGDTCMFS HKILPQESTS TPNLKTESKP PGIPDSLDTE KQSNMSGRLK  660
QILVTVPNST GTSCNRTPLG GAQLKKMTGP PPNGIKFLSF GKPSDSSSQM KNDNVECGNV  720
LAQSRVCSAE KSNESSRKIQ PNPAPKGINF LSFGRTLLQS NRENLATPSS DNGDPISSGN  780
QIQAVSKTGH DSNELLKNVQ MTTPKQTNFL SPTGNYASNE LVSSSSNWKA GTDLFVQNKG  840
NVWDKHEGLS AVLLRPPGTP ISSGQFSDSL ASSISKGTPR SAQRALLSTL AFAAKHDSFM  900
NKGKSSAFPS LGNGGNKDGG NENICGSLKN DQAKASKLID ILYSIGSKSN L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1500521KKRGPLSEGKKERKKIQKRKKR
2512534RKKIQKRKKRAEKNRKAGVKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444223.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
RefseqXP_008444224.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
RefseqXP_008444225.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
RefseqXP_008444226.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
RefseqXP_008444227.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
RefseqXP_008444230.10.0PREDICTED: uncharacterized protein LOC103487622 isoform X1
TrEMBLA0A1S3B9F10.0A0A1S3B9F1_CUCME; uncharacterized protein LOC103487622 isoform X1
STRINGXP_008444223.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323