PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010515P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 29599.9 Da    PI: 9.4955
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010515P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-284696151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v+++if+s+gk++ey+s
  MELO3C010515P1 46 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCS 96
                    79***********************************************96 PP
2K-box90.72.7e-30108205198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sgk+l++ak+e+l++e++++kke++n+q e+Rhl Ged++sL++keL++Le++Le++l+ +R+k++e+++++  + +++e+e+++ n +L 
  MELO3C010515P1 108 YHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMSLEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELY 202
                     8999******************************************************************************************9 PP

           K-box  96 kkl 98 
                     +k 
  MELO3C010515P1 203 QKE 205
                     996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.3243898IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-403897IPR002100Transcription factor, MADS-box
CDDcd002651.14E-4139117No hitNo description
SuperFamilySSF554559.42E-3639133IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-284060IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004094IPR002100Transcription factor, MADS-box
PfamPF003191.7E-224794IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-286075IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-287596IPR002100Transcription factor, MADS-box
PfamPF014862.9E-19119200IPR002487Transcription factor, K-box
PROSITE profilePS5129714.635121207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNTKTQYRMG PLYVHYFKNP YVCFEELKRK EEEKRKKMGR GKIEIKRIEN SSNRQVTYSK  60
RRNGIIKKAK EITVLCDAQV SLVIFASSGK MHEYCSPSTP LVDILDKYHK QSGKRLWDAK  120
HENLSNEMDR VKKENDNMQI ELRHLRGEDI TSLNYKELMS LEEALENGLT GVREKQSEFM  180
KMMRTNERMM EEENKRLNYE LYQKEMVAMG DSVREMDIGY NQRMRDFNSQ MPFAFRVQPI  240
QPNPQERE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1738112173MEF2 CHIMERA
6byy_B8e-1738112173MEF2 CHIMERA
6byy_C8e-1738112173MEF2 CHIMERA
6byy_D8e-1738112173MEF2 CHIMERA
6bz1_A9e-1738112173MEF2 CHIMERA
6bz1_B9e-1738112173MEF2 CHIMERA
6bz1_C9e-1738112173MEF2 CHIMERA
6bz1_D9e-1738112173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0432550.0AF043255.1 Cucumis sativus MADS box protein 26 (CUM26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444207.10.0PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA251e-117MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1S3B9U10.0A0A1S3B9U1_CUCME; floral homeotic protein PMADS 2
STRINGXP_008444207.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]