PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010371P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 308aa    MW: 34229 Da    PI: 9.8992
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010371P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.5e-32531702112
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....seceaesssssasnsssg... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +sa           +s  s  +   +   
  MELO3C010371P1  53 FGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSAslglhY-----QSMLSPTTTVVHphr 142
                     689*************************************************************88888333331.....333333322111233 PP

             TCP  89 .............kaaksaakskksqksaasalnlak 112
                                  +       +k++q++++  +n+++
  MELO3C010371P1 143 sefkiidkagvedE-------TKQKQHKSN--SNPSH 170
                     34446543323221.......222222222..33333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-2955171IPR005333Transcription factor, TCP
PROSITE profilePS5136930.67155113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPADKHDERH NMIKNSKEEN SPPPKLAAGS SSSSATPWLR LKDPRIVRVS RAFGGKDRHS  60
KVCTIRGLRD RRVRLSVSTA IQLYDLQDRL GLNQPSKVVD WLLNAAKDEI DELPPLPIPS  120
ASLGLHYQSM LSPTTTVVHP HRSEFKIIDK AGVEDETKQK QHKSNSNPSH PNSSFSALLN  180
NVSAPPFGFY WDPNPPSSSS STTNNNLPFL TSQAGDNNNN NNLHTFNHLN LSLPPSPLSL  240
STASPFLEFS QLHQNFFINN NNNNNPSFHP NVRPFHFSMA TKFLSHQDKN NNNVDPTSKD  300
HGFASHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2060114155Putative transcription factor PCF6
5zkt_B8e-2060114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444059.10.0PREDICTED: transcription factor TCP17-like isoform X1
TrEMBLA0A1S3B9160.0A0A1S3B916_CUCME; transcription factor TCP17-like isoform X1
STRINGXP_008444059.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-47plastid transcription factor 1