PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010223P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 513aa    MW: 55809.9 Da    PI: 6.458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010223P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25199255259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+ + +rsYY+Ct+++C +kk +e++++ ++++ei+Y+++H h+
  MELO3C010223P1 199 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKK-IECCDDSGQTTEIVYKSQHSHD 255
                     7********************************98.*********************7 PP
2WRKY98.25.1e-31374430359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e + e+p++v+itY+g H+h+
  MELO3C010223P1 374 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHD 430
                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.488193257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-21193257IPR003657WRKY domain
SuperFamilySSF1182903.01E-20196257IPR003657WRKY domain
SMARTSM007747.8E-24198256IPR003657WRKY domain
PfamPF031061.2E-17200255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-32357432IPR003657WRKY domain
PROSITE profilePS5081132.179367432IPR003657WRKY domain
SuperFamilySSF1182903.53E-27368432IPR003657WRKY domain
SMARTSM007743.0E-35372431IPR003657WRKY domain
PfamPF031067.1E-24374429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MTEPESFGTD QLGSSKAAIE GQEDDEEEME DSDDEPELEG EGGGRVSELK PTELRTGPSV  60
CEAVVMGSLS ETLTVAFVNQ SSENGRSDGL PVNSSAQSVE GAELKQAPSS HSEPLAVEST  120
QTDKVQEQNH LQLTVFKGPD SEQSPTSVTQ SISSSASPNL SEHKLSPKVQ KVCKPEPNQK  180
NFFNHKTPSS VPNARTPASD GYNWRKYGQK QVKSPKGSRS YYKCTYSECF AKKIECCDDS  240
GQTTEIVYKS QHSHDPPRKI SIPKESKLVP YVEPVVKKII AEHSRRVIND SDPPTSSKEP  300
LRETAIVVFE RKRQYSNDSN GNDEFKIKDE NDYETEAKLK VKKGSAGNSG TSLKPGKKPK  360
FVVHAAGDVG ISGDGYRWRK YGQKMVKGNP HPRNYYRCTS AGCPVRKHIE SAVENPNAVI  420
ITYKGVHDHD TPVPKKRHGP PSALLVAAAA PASMSSNTQP KKTDVVESQI SSTQWSVDAE  480
GELTGEALEL GGEKAMESAR TLLSIGFEIK PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25344432177Probable WRKY transcription factor 4
2lex_A2e-25344432177Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840090.0GU984009.1 Cucumis sativus WRKY protein (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443858.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-127WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S3B8J50.0A0A1S3B8J5_CUCME; probable WRKY transcription factor 32
STRINGXP_008443858.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32