PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010057P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 534aa    MW: 58729.2 Da    PI: 6.094
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010057P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.5e-3349105259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d++++ei+Y+g Hnh 
  MELO3C010057P1  49 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSL-DGQITEIIYKGAHNHA 105
                     7****************************************.***************7 PP
2WRKY104.17.4e-33273330259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe
  MELO3C010057P1 273 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHE 330
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.11243107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2846107IPR003657WRKY domain
SuperFamilySSF1182905.62E-2646107IPR003657WRKY domain
SMARTSM007743.3E-3748106IPR003657WRKY domain
PfamPF031064.4E-2549104IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-36257332IPR003657WRKY domain
SuperFamilySSF1182904.97E-28265332IPR003657WRKY domain
PROSITE profilePS5081137.7267332IPR003657WRKY domain
SMARTSM007742.6E-37272331IPR003657WRKY domain
PfamPF031061.3E-24273330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MESCLSSITT NQPCIHEEST QGDDIDTQHP LEDEQKGSYI PMGMLRTSED GYNWRKYGQK  60
QVKGSEYPRS YYKCTHPNCL VKKKVERSLD GQITEIIYKG AHNHAKPDPT RRAMVGSVPI  120
SGDTPEIGEG GGNHFKLEAG LTWRNTQYGV KDIKPISNCS VDGLERTSSV SVLTELSDPL  180
LNPQEKTVGV LEPVGTPELS STLASHDDDS GGGGDDDLTT QGSISVCTEA DDAEPELKRR  240
RKEESSIETN LASRSVREPR VVVQIETEVD ILEDGYRWRK YGQKVVKGNP NPRSYYKCTS  300
AGCLVRKHVE RASHDLKCVI TTYEGKHNHE VPAARNSSQV NLSNGNAQPP ASHVQPNMGL  360
SRNSNVPKSE TEIQDLATHF YPKPEFNHDY QRSGCFDTFT NDMKLGAPPF CQMKFPPLRN  420
TLPYSSFGLS SKHTATGISG SLASVVSDLP ISLPLNQKLS AAGYDYTNGR PILPFQVFLA  480
GQQLRETDRF LTPKQEHDDD NICASFQPVV DSSSGSSSSS ISSVYQQIMG NFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3349333878Probable WRKY transcription factor 4
2lex_A3e-3349333878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443695.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899795.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899796.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_016899797.10.0PREDICTED: WRKY transcription factor SUSIBA2-like isoform X1
TrEMBLA0A1S3B9D60.0A0A1S3B9D6_CUCME; WRKY transcription factor SUSIBA2-like isoform X1
STRINGXP_008443695.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-82WRKY DNA-binding protein 34