PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009948P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 284aa MW: 32087.7 Da PI: 4.4986 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1e-20 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k MELO3C009948P2 69 KKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 122 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.3 | 8.5e-43 | 68 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ +++ ke++ L++e++ MELO3C009948P2 68 EKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLVSNYDAIVKENAVLKSEVA 159 69**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.686 | 64 | 124 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-20 | 65 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-18 | 67 | 128 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-18 | 69 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.97E-19 | 69 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 70 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-6 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-6 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.3E-18 | 124 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MESGRFLFNP PPYGGNMLYL GGAGGDPCLR GGRTMMSMSM NESPKGRPFF RSPDDLYDDE 60 YYDEFYPEKK RRLTHDQVQM LEKNFEEENK LEPERKSQLA KKLGLQPRQV AVWFQNRRAR 120 WKTKQLERDY DVLKASYDSL VSNYDAIVKE NAVLKSEVAS LTEKCLAKEL DGGEATIPSI 180 TSELLLADIT NISIPQSGRK AEDRLSSGSD SSAVVDDNCP QLIDSGDSYF PSIEYPQCAH 240 LPNGLQMEDN DTNDNSNYLF SDMFATTNQQ SQEGRPPAWW AWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443498.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 2e-83 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3B860 | 0.0 | A0A1S3B860_CUCME; homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_008443498.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-61 | homeobox 1 |
Publications ? help Back to Top | |||
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