PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009948P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 250aa MW: 28546.6 Da PI: 4.4207 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.3e-21 | 35 | 88 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k MELO3C009948P1 35 KKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 88 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.7 | 6.5e-43 | 34 | 125 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ +++ ke++ L++e++ MELO3C009948P1 34 EKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLVSNYDAIVKENAVLKSEVA 125 69**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.686 | 30 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-20 | 31 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-18 | 33 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.82E-18 | 35 | 91 | No hit | No description |
Pfam | PF00046 | 3.6E-18 | 35 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 36 | 97 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.5E-6 | 61 | 70 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-6 | 70 | 86 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.9E-18 | 90 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MMSMSMNESP KGRPFFRSPD DLYDDEYYDE FYPEKKRRLT HDQVQMLEKN FEEENKLEPE 60 RKSQLAKKLG LQPRQVAVWF QNRRARWKTK QLERDYDVLK ASYDSLVSNY DAIVKENAVL 120 KSEVASLTEK CLAKELDGGE ATIPSITSEL LLADITNISI PQSGRKAEDR LSSGSDSSAV 180 VDDNCPQLID SGDSYFPSIE YPQCAHLPNG LQMEDNDTND NSNYLFSDMF ATTNQQSQEG 240 RPPAWWAWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 90 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443498.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 6e-76 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3B860 | 0.0 | A0A1S3B860_CUCME; homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_008443498.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-58 | homeobox 1 |
Publications ? help Back to Top | |||
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