PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009873P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 299aa MW: 31850.6 Da PI: 8.4024 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 112.2 | 2.7e-35 | 60 | 116 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++ MELO3C009873P1 60 QVVYKECLKNHAASLGGHALDGCGEFMPSPTATaTDPTSLKCAACGCHRNFHRREPD 116 799****************************99999******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-29 | 61 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-19 | 61 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.418 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.5E-32 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.18E-19 | 191 | 261 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-30 | 194 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.2E-26 | 200 | 257 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDLTPAISTA APTISTGGGA VKSPELDSET PIKIQPTTKS LPFTNGVLKR HHHIAPPPPQ 60 VVYKECLKNH AASLGGHALD GCGEFMPSPT ATATDPTSLK CAACGCHRNF HRREPDDPIA 120 TPTTTHVIEY QPHHRHHPPP PPTAAAAHRS PSSASPPPIS SSYYPSAPHM LLALSGVLPE 180 NAGSGGGFHH SIMTPSPNSR KRFRTKFTQN QKERMYEFAE KVGWKIQKRD EDMIQEFCSD 240 VGVDRGVLKV WMHNNKNTLG KKDGSRNMNG SGGEGDGDDK INGGGEPHAT ANGSSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-22 | 199 | 258 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443414.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LHF0 | 1e-80 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1S3B7H7 | 0.0 | A0A1S3B7H7_CUCME; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_008443414.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-79 | homeobox protein 34 |
Publications ? help Back to Top | |||
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