PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009805P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 255aa MW: 29689.9 Da PI: 8.457 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.6 | 2.3e-34 | 27 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y ++ed+ ++++isw+++g++f+v+++ efa ++Lp+ Fkh+nf+SFvRQLn+YgF+k+ +++ weF +++Fkkg ke l++ MELO3C009805P1 27 FLTKTYMLVEDPMTDNVISWNSDGTTFIVWQPPEFAIDLLPTLFKHNNFSSFVRQLNTYGFRKIATSR---------WEFYNDKFKKGCKERLCE 112 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k MELO3C009805P1 113 IRRRKA 118 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.8E-35 | 21 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-49 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.12E-32 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.3E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.1E-30 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGEAMVSLGN VCEESIAVVS EPTPSPFLTK TYMLVEDPMT DNVISWNSDG TTFIVWQPPE 60 FAIDLLPTLF KHNNFSSFVR QLNTYGFRKI ATSRWEFYND KFKKGCKERL CEIRRRKAWT 120 NKRKHNSNAK AIQVTHQDNH DEDQRSLSTS SSDDQYTMLA YENKKLKKEN GVLSFELTNM 180 KKKCRELLDL VAKYEFMVIN GNEKKEDEIM LKPNLKLFGV QLEVEEEDEM EIKQNKRKRS 240 IHPNKPFLLS QTCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-18 | 1 | 116 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-18 | 1 | 116 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-18 | 1 | 116 | 3 | 129 | Heat shock factor protein 1 |
5d5w_B | 3e-18 | 25 | 116 | 2 | 104 | Putative transcription factor |
5d5x_B | 3e-18 | 25 | 116 | 2 | 104 | Putative transcription factor |
5d5x_E | 3e-18 | 25 | 116 | 2 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443318.1 | 0.0 | PREDICTED: heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 5e-63 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A1S3B7P7 | 0.0 | A0A1S3B7P7_CUCME; heat stress transcription factor B-3-like | ||||
STRING | XP_008443318.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-64 | heat shock transcription factor B3 |