PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009788P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 505aa MW: 54329.6 Da PI: 6.3692 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.6e-38 | 113 | 172 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grr+nk+ MELO3C009788P1 113 PDKIIPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQL 172 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-30 | 110 | 170 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-31 | 115 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.463 | 117 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 119 | 155 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MTSSTTTQDV ISPPHFKDLA IKLFGRTIPL PESQISAAPL HNPDACNNLK KAEQSVSGAE 60 DSCPSERSSV LVGDNEENQA SNVMSNKGES ELHLKEEQAD GNGTDQERAF KKPDKIIPCP 120 RCNSLETKFC YFNNYNVNQP RHFCKNCQRY WTAGGTMRNV PIGAGRRRNK QLASQYRQII 180 VSSEGVATAR LETSDATNHH HLLSSVESPP ALRPSNGSST VLKFGPEAPL CESMETVLSL 240 GDQKRSIEIG SAYCGDSPEE PSSCGSSMTT TSIRGNELSK SVIERPEAVR LSNSSSDITA 300 SNTVHCYPVP QLVFPLNQGG SSLISSAMTQ SSDSTSVPNI SSHPNPPVQW LPATMLAVPG 360 FCTPSLPLQF VPASCWGCTP VWTSTGTGNL TVVPSDVCAS QTSTCPTSSS PTLGKHLRDT 420 NSLAEDEKSE KCVVVPKTLR VDNPSEASRS PIWTTFGIHP YPKENISKGS VFETSETTNA 480 DSKGHFRDTP QILEAKTGSF YSLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443297.1 | 0.0 | PREDICTED: cyclic dof factor 3-like | ||||
TrEMBL | A0A1S3B779 | 0.0 | A0A1S3B779_CUCME; cyclic dof factor 3-like | ||||
STRING | XP_008443297.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-58 | cycling DOF factor 2 |