PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009753P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 469aa    MW: 51663.9 Da    PI: 8.2202
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009753P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-10181223345
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  MELO3C009753P1 181 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 223
                     56889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-8179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415181225IPR004827Basic-leucine zipper domain
PfamPF001704.0E-7182223IPR004827Basic-leucine zipper domain
CDDcd147081.49E-22183234No hitNo description
SuperFamilySSF579597.5E-7183226No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7184227No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141444.9E-30266340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGSRTVKIGA DDLNKTVNGM PSFVSSMPTA NNSMGAEGSS IPSSRISDLR TLEQTLGFHI  60
EDVDLTRNPL YNQIKSNSST LNNNIQFGSL IKPLASTDVN LPTAVMGSQT LPLQKESNPN  120
LVSTSGGPRE NWGESNMADT STRTDTSTDD TDDKSQRLDK DQGNSPAVYD SSNKSKEKTA  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISNSGDQA  240
HSMSGNGALA FDVEYSRWLE EHNRLMNELR AAVNSHAGDT ELRTIVDNVT TQFDDIFRLK  300
GIAAKADVFH ILSGMWKTPA ERCFLWIGGF RSSEILKLLV NQLEPLAEQQ LMGICNLQQL  360
SQQAEDALSQ GMDALQQSLA ETLASATPAT SGSSGNVANY MGQMAMAMGK LGTLEGFLRQ  420
ADNLRQQTLQ QMHRILTTRQ SARALLAIND YFSRLRALSS LWLARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-150LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-150LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443255.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3B7K00.0A0A1S3B7K0_CUCME; transcription factor HBP-1b(C38)-like
STRINGXP_008443255.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-145TGACG motif-binding factor 6