PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009651P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 370aa    MW: 39987.3 Da    PI: 9.3298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009651P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13297342655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  MELO3C009651P1 297 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 342
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-13295344No hitNo description
Gene3DG3DSA:4.10.280.105.7E-15296352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGTNTHQSFQ QPNSALLRFR SAPSSLFADF AHGIDSKRLN PFESSESERL VSRFGSRGGG  60
CNSNDSESPV AGNYSSGLPP HYPRLSSAVN CSSSSSSSSS SSCSSSSSSM CSSLGFLGSN  120
LVRQSSSPAG VLSQFNQNGY GGGSFSRLSG NNNGGEVVSP SSNRLNSQIS FSSLLPSSLG  180
MFPQISEQVV GNEKLSNSNN GETQYFTPSG FPFASWNESS QFSETFPGVK RDPDSNKKFS  240
SSHQNGEIGN RVHLLSHHLS LPKNVSDVAS IEKLLQLQDA VPCRIRAKRG CATHPRSIAE  300
RVRRTRISER MRKLQDLVPN MDKQTNTADM LDLAVDYIKE LQKQFKTLSD NRANCVCVNM  360
QKPLSNQIM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443086.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR31e-88BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1S3B7A40.0A0A1S3B7A4_CUCME; transcription factor bHLH130
STRINGXP_008443086.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]