PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009552P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 387aa MW: 43207 Da PI: 4.3517 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.5 | 1.1e-10 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i ++ r+ +f kRr g+lKK +EL +LC++ + +i +++ MELO3C009552P1 11 IASDNARKASFKKRRLGLLKKVSELTTLCGVYAFAVINGPD 51 678889*************************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.325 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.37E-25 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-19 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-12 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MTRKKVKLVW IASDNARKAS FKKRRLGLLK KVSELTTLCG VYAFAVINGP DEDHPVIWPS 60 LSAAQHLYRR FHSLPEVERQ KKMTNQETYL KERTTKTQDL LKKHIKKNQE LELDLLMHQL 120 HQGRQIYQLT NGELLGLFWM IEERIRDCRK RIEYHHQVHR LPPPGLVTSN SPLLETENNE 180 IDLIDNGRNL MDQWFIDMVM NTNDKIGGSS SSMAGELGFV QAEGNGVDLM NGGGSSMVEV 240 SEIGGTGTII VEGDGEENNL LSEWNFGGND DSGMSEIEKL VNDIGGVGGH VELNASSMDL 300 SHEQGDFGIN CNVVGGPMGS VYTDGVEVND DAEMMLHGLY ENGISGEENV NQNGNDQNEL 360 EEDDEVEDED DEDDLLSKEW SNNFTP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLVWIASDNARKASFKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442937.1 | 0.0 | PREDICTED: uncharacterized protein LOC103486691 | ||||
TrEMBL | A0A1S3B6W2 | 0.0 | A0A1S3B6W2_CUCME; uncharacterized protein LOC103486691 | ||||
STRING | XP_008442937.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 2e-37 | AGAMOUS-like 48 |