PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009551P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 326aa    MW: 35700.7 Da    PI: 9.7272
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009551P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.34e-31158214158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq Rak+  e+kl +++rkpy+heSRh hA+rRpRgsgGrF
  MELO3C009551P1 158 DGPIYVNAKQYHGIIRRRQIRAKAMMENKL-ARTRKPYMHESRHLHAMRRPRGSGGRF 214
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-34156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.928157217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-23160182IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27160214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-23191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPQTGCLKE HERIIPNSLG QLSPSPARLW SAFGQGPQSI FGDFGQVKAS SIQQLGSNGK  60
EFNGTKQVVS HGLDKLNTAP FSIYPGDYKM SMDAQKPSPV FSLQSPLTEY HNRFELGFGQ  120
PLICTNYPYM EQHYGILSAY GPQIPGRIML PMSLTSDDGP IYVNAKQYHG IIRRRQIRAK  180
AMMENKLART RKPYMHESRH LHAMRRPRGS GGRFLNTKNL KNGKSSMEPK KIDEVNLSDS  240
TGSQCSVVLQ SESGTLNSPN EAKGRGFSLS SSEVSSIFSR GLQRFQINHL GPSIPSLAEI  300
IDGGGHGMVL PKWVAAADNC CDLCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17158219263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442935.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_008442936.10.0PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBLA0A1S3B7N70.0A0A1S3B7N7_CUCME; nuclear transcription factor Y subunit A-10
STRINGXP_008442935.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-61nuclear factor Y, subunit A10