PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009544P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 265aa MW: 29257.6 Da PI: 6.4943 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.6 | 2.5e-37 | 14 | 68 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++s MELO3C009544P1 14 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRS 68 8***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MERGWKPMVE ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRSPK PLTLTPSPSN PKLHHTNDSD YQRHHCDLSG SDVSPTIDLA VVYANFVNQK 120 PDTRETIPTT NTTSNAAGHF PVSGESGVVG CGNFCEFSMQ ECGLGASDYQ VGGGCFGLEE 180 SNNNNENQVD NIEVAARELQ LPPLPGEDVV EAWGNSMIMV NNHHRLQPTR VEMFEDPNLL 240 SGNWSPIDLS NYDTFSKGLT NMHI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443597.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3B959 | 0.0 | A0A1S3B959_CUCME; dof zinc finger protein DOF3.5 | ||||
STRING | XP_008443597.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 9e-48 | Dof family protein |