PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009500P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 305aa    MW: 33737.1 Da    PI: 9.2836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009500P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.92e-3342156199
                     EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k ltpsdv+k++rlv+pk++ae++                g +  ++  l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+
  MELO3C009500P1  42 FEKPLTPSDVGKLNRLVIPKQYAEKYfplspsaavataaaaaGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDV 136
                     99*****************************9999999999866677999********************************************* PP

                     EEEEE-SSSEE..EEEEE-S CS
              B3  80 vvFkldgrsefelvvkvfrk 99 
                     vvF++++r++ +l++++ r+
  MELO3C009500P1 137 VVFERHRRDGDRLFIGWKRR 156
                     ****99999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-3238157IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-4240161IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-3040146No hitNo description
PROSITE profilePS5086314.64942157IPR003340B3 DNA binding domain
PfamPF023621.8E-3042156IPR003340B3 DNA binding domain
SMARTSM010193.1E-2842157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSINNFSPDF HQPLFSTSQL PIMLNPKSSL SLAVTADHLP MFEKPLTPSD VGKLNRLVIP  60
KQYAEKYFPL SPSAAVATAA AAAGDSADKG LLLSFEDESG KIWRFRYSYW NSSQSYVLTK  120
GWSRFVKEKR LDAGDVVVFE RHRRDGDRLF IGWKRRSAPS PADSAVATGS GGVGGGGGWT  180
RMFCSANSYP SHHQHRHLPS PPYQSSSDTP HAESSVQSQT VSIGNSKILR LFGVDLECQT  240
DMSEPEPPSL LNVGSSLSLS GRDPTRHTFY PHYSSPLPHH MVCQLKFIFI IIFSLFKFFF  300
NSNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-464116913130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442877.10.0PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI35e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1S3B6T30.0A0A1S3B6T3_CUCME; B3 domain-containing protein At2g36080-like isoform X1
STRINGXP_008442877.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.25e-65B3 family protein