PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009444P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 406aa    MW: 44381 Da    PI: 8.4162
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009444P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.95.7e-26144188145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  MELO3C009444P1 144 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVET 188
                     79****************************************986 PP
2QLQ41.25e-1575110237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +F+ aQ q+L+ Q+l+++y++a++ vPpeLl  i+k
  MELO3C009444P1  75 YFSVAQRQELELQALIFRYMIAGAAVPPELLHLIKK 110
                     79*****************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.8E-674110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.95275110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-1076108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.192144188IPR014977WRC domain
PfamPF088792.4E-22145187IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009624Biological Processresponse to nematode
GO:0009631Biological Processcold acclimation
GO:0016036Biological Processcellular response to phosphate starvation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0050826Biological Processresponse to freezing
GO:0051365Biological Processcellular response to potassium ion starvation
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDFDLKQCRK QRESESDEHQ NSSKISKFFP QHNPLNPSSS SSSSSVLPLF VPSKTSNILS  60
AFSDSSSTLP RMLGYFSVAQ RQELELQALI FRYMIAGAAV PPELLHLIKK SLLSSNNTPF  120
FLHHPLQHFP QYPTSWYWGR AAMDPEPGRC RRTDGKKWRC SRDVVAGQKY CERHMHRGRN  180
RSRKPVETAT NNAATTAGGS GGGCSISSSS NRGGGGRPFL TVESGNYFSM CEQTPSVDLL  240
HLNQGSCSHS LSENKNFYES HKEPSTGDVK SDGHILRHFF DDWPRSENDG CGNVNNNVNQ  300
RMNSTSASST SLSISMPSLS SDVSLKLSTG GSSDQGSDHH NHQNGNVDRE HAPLNWAAGW  360
AATQMASMGG PLAEALRSAN NSSLPTSVLH QLQRTTNSEA SFIST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442809.10.0PREDICTED: growth-regulating factor 3
TrEMBLA0A1S3B7A50.0A0A1S3B7A5_CUCME; growth-regulating factor 3
STRINGXP_008442809.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-67growth-regulating factor 4