PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C009430P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 34568.4 Da PI: 4.3592 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 289 | 312 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+++F + L++H + H MELO3C009430P2 289 FPCKTCNRTFGSETALQSHTKAkH 312 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.7E-6 | 288 | 312 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0021 | 289 | 312 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.695 | 289 | 316 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 291 | 312 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MEFWGAEVKV GEPLLVSPGE EKILHLSQAC LGESKSKGSE QVFLYVKVGN QKLVLGTLSS 60 EKFPQVSFDL VFDKEFELSH NWKNGSVHFT GYTSLLPEEE ESTYTDSEED FPLAVTDNGK 120 PEPEPKKDAK PDTSGTKKKV QIVEPNKVAS NSNIDSKKNE DSSDEDDDED EESTDDENEN 180 GGEEDDTDDD ENESSGVDSE DSDEDSDDSL EEDEQTPKKA EASKKRPLDS ANKTPAPDKK 240 AKLVTPQKTD GKKGVAHVDT PHPSKKAGKM PAANDKTKQQ TPKSANAAFP CKTCNRTFGS 300 ETALQSHTKA KHTADK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-116 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-116 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442794.1 | 0.0 | PREDICTED: histone deacetylase HDT1 | ||||
TrEMBL | A0A1S3B626 | 0.0 | A0A1S3B626_CUCME; histone deacetylase HDT1 | ||||
STRING | XP_008442794.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44750.2 | 2e-36 | histone deacetylase 3 |