PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009430P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 314aa    MW: 34286.1 Da    PI: 4.3308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009430P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-05286309123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+++F +   L++H +  H
  MELO3C009430P1 286 FPCKTCNRTFGSETALQSHTKAkH 309
                     89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.7E-6285309IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.695286313IPR007087Zinc finger, C2H2
SMARTSM003550.0021286309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEFWGAEVKV GEPLLVSPGE EKILHLSQAC LGESKSKGSE QVFLYVKVGN QKLVLGTLSS  60
EKFPQVSFDL VFDKEFELSH NWKNGSVHFT GYTSLLPEEE ESTYTDSEED FPLAVTDNEP  120
EPKKDAKPDT SGTKKKVQIV EPNKVASNSN IDSKKNEDSS DEDDDEDEES TDDENENGGE  180
EDDTDDDENE SSGVDSEDSD EDSDDSLEED EQTPKKAEAS KKRPLDSANK TPAPDKKAKL  240
VTPQKTDGKK GVAHVDTPHP SKKAGKMPAA NDKTKQQTPK SANAAFPCKT CNRTFGSETA  300
LQSHTKAKHT ADK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-116LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-116LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442794.10.0PREDICTED: histone deacetylase HDT1
TrEMBLA0A1S3B6260.0A0A1S3B626_CUCME; histone deacetylase HDT1
STRINGXP_008442794.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-36histone deacetylase 3