PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009422P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 468aa    MW: 52398.5 Da    PI: 6.2791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009422P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.4e-24126225186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                     +Wt+ +v++Li+a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  +
  MELO3C009422P1 126 KWTDMMVRLLITAVFYIGDEGGSEPvdhvgkkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQTL 220
                     7*******************998755667778899999**********************************************559******** PP

        trihelix  82 fdqle 86 
                     +d++e
  MELO3C009422P1 221 LDSME 225
                     99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-21124250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
METNSLGGGG VGGSGGGGGG GGAGAAGGGG MFSGMNSSML GLELPLHQNP TNPTNPHQLH  60
HPPMVSYVQH DPHHHQQPPS VSVKYPFPTK AKPQQSNLSD DEEQGFAADD SNGDGKKKIS  120
PWQRMKWTDM MVRLLITAVF YIGDEGGSEP VDHVGKKKPV GLLQKKGKWK SVSRAMMEKG  180
FYVSPQQCED KFNDLNKRYK RVNDILGKGT ACKVVENQTL LDSMELTPKT KEEVRKLLNS  240
KHLFFREMCA YHNTCRHSTT HPSPDAATEP SHLPQQQQQQ QLCFHATDTT TSASVAAGEC  300
SKSGDEEDEE EEEDESEEEE EDEETEGRQE EEEETESRKR ARKGGITAGM QQLSAEVMGV  360
ISDGGRSPWE KKQWMKSRLI QLEEQKVSWQ TQAFELEKQR LKWVKFRSKK ERDMERAKLE  420
NEKRMLENER MMLIVKKNEL DLMGMQHYQQ QQQHSSNKRG DPSSITG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442785.10.0PREDICTED: ESF1 homolog
TrEMBLA0A1S3B6J60.0A0A1S3B6J6_CUCME; ESF1 homolog
STRINGXP_008442785.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-109sequence-specific DNA binding transcription factors