PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009253P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 754aa    MW: 84940.2 Da    PI: 5.8426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009253P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.62.9e-1183787491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d+++a++lL++++++asp gd  qRla++f+ +L+arla+++s++yk l  ++ts    +++l+a++l+  ++P+ k+s+
  MELO3C009253P1 378 LRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYHLYLAACPFRKISN 469
                     6789************************************************************888888...89******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t N++I+ a+e+++r+H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+
  MELO3C009253P1 470 FTSNRTIMVAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAESFNVPFEYNA-IAKKWET 563
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E l+Vn+ ++ ++lldesvs +s+r++vLklv ++sP++++    +  +n++ F++rf eal ++sa+fd+le+ +pre+ er+
  MELO3C009253P1 564 VTVEDLNIDQDEFLVVNCLYRAKNLLDESVSADSARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERM 658
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gre+ nv+aceg er+er et+++W+ r+++aGF ++p+  ++ + a   +r  + + + ++e+s +l++gWk+r ++++S W+
  MELO3C009253P1 659 LLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFMQLPIAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWK 749
                     **************************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.259352729IPR005202Transcription factor GRAS
PfamPF035141.0E-115378749IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MTPDRELRKS GRYIDNRPFG IQAEEGTHGR PRFQNTIFSH NFQEFDCLLP NPSPSNVASS  60
SSIRTSSSND ASHEEDYLED CDFSDAVLTF INQILMEEDM EDKTCMLQDS LDLQAAEKSF  120
YEVLGKKYPP SPEVNTSLAN QYTDSLNEEL CGDSSNYLSN YGSTSNHGDD DPQTLSDVFQ  180
IRSALGDTIS PSSNSSSNSI ISGGDGWVDF SNNTIQVPEP NNRSQSIWQF QKGFEEASKF  240
LPGGNKLRLD FEVNGSATQG PDEGTSQIYL KAARKDQRNV LSLESRGRKN PHDENGDLEE  300
ERSSKQAAVF AESPLRSKMF DIVLLCSAGE GHERLVSFRQ ELHNAKIKSM LQSGQLKVSN  360
GGRGRRKKQS AKKEVVDLRT LLISCAQAVA ADDHRNASEL LKQVRQHASP FGDGSQRLAS  420
CFADGLEARL AGTGSQIYKG LINKRTSAAD VLKAYHLYLA ACPFRKISNF TSNRTIMVAA  480
ESATRLHVID FGILYGFQWP TLIQRLSWRK GGPPKLRITG IEFPQPGFRP AERVEETGRR  540
LAAYAESFNV PFEYNAIAKK WETVTVEDLN IDQDEFLVVN CLYRAKNLLD ESVSADSARN  600
TVLKLVHKIS PNLFISGIVN GAYNAPFFVT RFREALFHFS AIFDMLETVV PREDYERMLL  660
EREIFGREAL NVIACEGWER VERPETYKQW QFRIMRAGFM QLPIAPEIFE RAVEKVRSSY  720
HRDFLIDEDS RWLLQGWKGR IIYAISTWKP SVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-483677508380Protein SCARECROW
5b3h_A3e-483677507379Protein SCARECROW
5b3h_D3e-483677507379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442537.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_008442538.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S3B5F60.0A0A1S3B5F6_CUCME; scarecrow-like protein 9
STRINGXP_008442537.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein