PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009231P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 528aa    MW: 59786.4 Da    PI: 5.1927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009231P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000113503891255
                     H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R R+ i +++ eLr+++P+      +K s    Lek+++++ +Lq
  MELO3C009231P4 350 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 389
                     447889************98.....899999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.6E-5337403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-6339404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.718339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVTENLSVVA YIKDRFNDIN FVDGACASVV PRPFESLDEQ TNFTTYMLEA ENHGAIHDIK  60
PPVSTLNQCA IQDVLTVSRR IRPETVHCEK GHKNDIQRTN MEELFAPLYQ SVSTGEVEFS  120
DFISLESLLP LGSQLRNHET GLFESNPHVF HSNSVDNVVE QQSGHNLVTK KEYGIADNFF  180
SFPDDCELQK ALGPVLLAQK PTNEFSYDPS STIRDTTSSL FCSRDFKEGD IEYLLEAMIT  240
AEDISDDAFS NNTINARIAD LVAKPRLSTN TCQSESSTIV VDDLALWNIP ESTTTATGRK  300
NLTSLSKSNS LVVNEREEHG RDMAQHRKGM KRSNSSRKIK VTSNTRQRPR DRQLIQDRIK  360
ELRQIVPNGG KCSIDGLLEK TIKHMLYLQR VTDQAEKLKQ LAQQEDFDSE NCTDLENEGV  420
QPNGTSWTWA FDIGSELQVC PIVVEDLEYQ GHILIKMLCN DMGLFLEITQ IIRGLDLTIL  480
KGVIERHSNN SWAYFIVEAP RGFHRMDVFW PLMHLLQRKR NPISCRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442512.10.0PREDICTED: transcription factor bHLH155-like
TrEMBLA0A1S3B5V20.0A0A1S3B5V2_CUCME; transcription factor bHLH155-like
STRINGXP_008442512.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-48conserved peptide upstream open reading frame 7