PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009231P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 646aa MW: 72656.5 Da PI: 4.7743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 494 | 533 | 12 | 55 |
H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R R+ i +++ eLr+++P+ +K s Lek+++++ +Lq MELO3C009231P3 494 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 533 447889************98.....899999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.4E-18 | 6 | 159 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00132 | 478 | 534 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-5 | 481 | 547 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-6 | 483 | 548 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.718 | 483 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
METLSLNHLL KSLCTHSQWI YAVFWKIKYQ TPPILTWEDG YCNYPKVEKH TGNMEYRMIR 60 GFDHVTSYYG TNIYDGDSGS CSVEPAVADM FCLQYALGEG TVGSAASSGN HSWVFLEDIF 120 TSNLSSASIY EGPTEWIIQY ASGIKVTENL SVVAYIKDRF NDINFVDGAC ASVVPRPFES 180 LDEQTNFTTY MLEAENHGAI HDIKPPVSTL NQCAIQDVLT VSRRIRPETV HCEKGHKNDI 240 QRTNMEELFA PLYQSVSTGE VEFSDFISLE SLLPLGSQLR NHETGLFESN PHVFHSNSVD 300 NVVEQQSGHN LVTKKEYGIA DNFFSFPDDC ELQKALGPVL LAQKPTNEFS YDPSSTIRDT 360 TSSLFCSRDF KEGDIEYLLE AMITAEDISD DAFSNNTINA RIADLVAKPR LSTNTCQSES 420 STIVVDDLAL WNIPESTTTA TGRKNLTSLS KSNSLVVNER EEHGRDMAQH RKGMKRSNSS 480 RKIKVTSNTR QRPRDRQLIQ DRIKELRQIV PNGGKCSIDG LLEKTIKHML YLQRVTDQAE 540 KLKQLAQQED FDSENCTDLE NEGVQPNGTS WTWAFDIGSE LQVCPIVVED LEYQGHILIK 600 MLCNDMGLFL EITQIIRGLD LTILKGVIER HSNNSWAYFI VEVGS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442512.1 | 0.0 | PREDICTED: transcription factor bHLH155-like | ||||
TrEMBL | A0A1S3B5V2 | 0.0 | A0A1S3B5V2_CUCME; transcription factor bHLH155-like | ||||
STRING | XP_008442512.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.3 | 4e-44 | conserved peptide upstream open reading frame 7 |