PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009220P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 480aa MW: 54118.5 Da PI: 7.3367 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.5e-10 | 276 | 313 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LAk++gL+ +qV++WF N R + MELO3C009220P1 276 FEHflHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVR 313 554459******************************98 PP | |||||||
2 | BELL | 86.3 | 3.4e-28 | 166 | 230 | 8 | 72 |
BELL 8 kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 k+ Lls+l+eV+++Ykqy++q+q v+ sFe + glg+a+pY++ A ka+ +hF+cLk+ai +q+ MELO3C009220P1 166 HKSTLLSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQL 230 5899**********************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.9E-33 | 100 | 228 | IPR006563 | POX domain |
Pfam | PF07526 | 8.0E-29 | 105 | 226 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 254 | 317 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-10 | 257 | 321 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.93E-13 | 257 | 318 | No hit | No description |
SuperFamily | SSF46689 | 2.52E-17 | 259 | 324 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 260 | 322 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.8E-19 | 274 | 313 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MAEGIESYDH VPQQSRRDKL REHPDHHHRS NFLPFYDPSS SDSSNRFQFH HHPFFDPQIQ 60 SPLFPEIHSF PTEPLSLSLS SHPNLLASPI TPPLPLGPFT GYASILKGSR FLKPAHHLLQ 120 DLCDSVHFSS SSSFIHDPSS DSFPHSPILD HHYPLPSSSD SSTPPHKSTL LSMLDEVYRK 180 YKQYYQQIQE VMTSFEYISG LGNAAPYANQ AIKAMYKHFK CLKNAILDQL QFNKKTHGDY 240 NQRSVQNPGF LDHQPVWRPQ RGLPERAVTV LRAWLFEHFL HPYPSDTDKL MLAKQTGLSR 300 SQVSNWFINA RVRLWKPMVE EIYMLETKQQ QTQKNLHKED RTTTRANDHH PSNSLTVEHP 360 STSTQQIQDT PPKRTRNEPP DMPMGNQDEP LNVSYNLSSH PHVGANVNMA GNNGGVSLTL 420 GLHQNNGIGG FSEPFPVGFP VAATRHFGLG IQGNSDGYVM GGHFSRDVLG GQLLHDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-16 | 263 | 321 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-16 | 263 | 321 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 8e-16 | 263 | 321 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 8e-16 | 263 | 321 | 5 | 63 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442501.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-99 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1S3B5U0 | 0.0 | A0A1S3B5U0_CUCME; BEL1-like homeodomain protein 9 | ||||
STRING | XP_008442501.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-80 | TALE family protein |