PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009160P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 306aa MW: 35985.9 Da PI: 7.4517 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.8 | 6.8e-24 | 58 | 140 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe ++km+e+gf+rs++qCk+kw+nl +ryk ++++e + s++++p++++l+ MELO3C009160P1 58 QWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEI---SRQQFPFYTELQ 140 7********************************************************************97...55679****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.13E-22 | 57 | 122 | No hit | No description |
Pfam | PF13837 | 2.7E-19 | 58 | 142 | No hit | No description |
PROSITE profile | PS50090 | 6.818 | 59 | 115 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEGHHHPHPH PPHPHPLIQL HQQQQIQHPP PPPPPHLHQS LAVDQAATGT AIADRFPQWS 60 IQETKEFLMI RAELDQTFME TKRNKLLWEI TASKMKEKGF NRSAEQCKCK WKNLVTRYKG 120 CETMEPEISR QQFPFYTELQ AIFGARRERI LWAEVESGGS GLKKKMMVLS SDDEDENDDS 180 DGDGGETKVS GRKRKKVKGT TIGGAEGSGK SSMNELKEIL EDFMNQQMQM EMQWREAFEA 240 REKERQMKEM EWRRNMEALE HERIMLERRW REREEQRRMR EEVRAEKRDA LITALLNKLR 300 RDDHI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 195 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM854820 | 0.0 | HM854820.1 Cucumis melo subsp. melo clone 00002, complete sequence. | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442411.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 6e-70 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A1S3B5M4 | 0.0 | A0A1S3B5M4_CUCME; trihelix transcription factor GT-3b | ||||
TrEMBL | E5GBE8 | 0.0 | E5GBE8_CUCME; Transcription factor | ||||
STRING | XP_008442411.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-64 | Trihelix family protein |