PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008929P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 324aa MW: 35881 Da PI: 8.1491

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008929P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	216	270	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ MELO3C008929P1 216 KTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 270 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	215	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	215	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	216	271	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	220	269	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MNAYGIDSKQ EIQQNHGLIT DYYSQNFRAQ QPRRMGACVH LSAMDEVESS ERLNSCPSKP 60 TSTIINLFES PTSAFFATEQ CMGIPPIQFQ SGSSSFNSLS TIFQSSGENF SLDSAEQSGL 120 DSEFSNTLQS VVKSQLCKRS FNGLPKASFV EHKVFDGSSN TIKKHYSVPF KDQIGCYNSI 180 AQPSFCSNSP RFSCLSGSIG SGSSSSSFNG NGFTAKTRIR WTQDLHEKFV DCVNRLGGAE 240 KATPKAILKL MDSEGLTIFH VKSHLQKYRI AKYMPESAES RDFHTEKAFN FNFHTLFCAS 300 SLALNTYGTY GQRIISYNYN SNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-24	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-24	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-24	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-24	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	215	273	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681882	0.0	LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442127.1	0.0	PREDICTED: uncharacterized protein LOC103486080 isoform X1
TrEMBL	A0A1S3B500	0.0	A0A1S3B500_CUCME; uncharacterized protein LOC103486080 isoform X1
STRING	XP_008442127.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-37	G2-like family protein