PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008343P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 451aa MW: 51584.5 Da PI: 6.8752

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008343P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.2e-24	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a++++++++ ++ +kk++W+ +sk+++erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d MELO3C008343P1 120 KWTDKMVKLLITAVSYIGDDIASDIdgsgrrkcqiiQKKGKWKLISKVIAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCQVVENPALLD 214 7************777777754222344555899*******************************************95699998888877 PP trihelix 84 ql 85 + MELO3C008343P1 215 VI 216 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.4E-21	118	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF 60 SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK 120 WTDKMVKLLI TAVSYIGDDI ASDIDGSGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC 180 EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT EKDKDDVRKI LNSKQLFYEE 240 MCSYHNSNRL HLPHDPALQR SLQLAFRARD DHDNDEPRRH QNDDFDEHEP GETDEHDDYE 300 ENFVPHTDNR RSLGVLGGSV KRLKRGQDHD DAHACGNSLS PLDCNKSSHP HSQAQFAQAD 360 TAHLETESMK ASTSQKQWME LRLLQLEDQK LQIQVEMLEL EKQKFKWERF NKKKKDRELE 420 KMRMVNEKMK LENERLALDL KQKQIGSGFH *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEGNLSQGGL IPGGSSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF  60
SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEDPSFNEDS IDGHNENSKG KKGSMWHRVK  120
WTDKMVKLLI TAVSYIGDDI ASDIDGSGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC  180
EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT EKDKDDVRKI LNSKQLFYEE  240
MCSYHNSNRL HLPHDPALQR SLQLAFRARD DHDNDEPRRH QNDDFDEHEP GETDEHDDYE  300
ENFVPHTDNR RSLGVLGGSV KRLKRGQDHD DAHACGNSLS PLDCNKSSHP HSQAQFAQAD  360
TAHLETESMK ASTSQKQWME LRLLQLEDQK LQIQVEMLEL EKQKFKWERF NKKKKDRELE  420
KMRMVNEKMK LENERLALDL KQKQIGSGFH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441519.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
TrEMBL	A0A1S3B4A7	0.0	A0A1S3B4A7_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
STRING	XP_008441519.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-140	sequence-specific DNA binding transcription factors