PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008307P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 247aa    MW: 27441.2 Da    PI: 9.2551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008307P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1368114354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  A++ +k+L
  MELO3C008307P1  68 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSAIDQVKDL 114
                     79*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.46665114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1366118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1568117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-968117No hitNo description
PfamPF000103.5E-1168114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEDNNWDRST KPEGLNFDHC NPNSSHEASL LHPWMINPQF SSSNEFFPSF SSPSEGIIVE  60
DRAASASKSH SQAEKRRRDR INAQLATLRK LIPKSDKMDK AALLGSAIDQ VKDLKRKAME  120
ASKNMTVPTD MDEVTIDSTM VEDNSSNNIA IKVSVSCDDR PELLTELIQV IKGLKLTTIR  180
ADMASVGGRI KSILILCNKD GEKSVCLNTV QQSLKLVLSR MSSSSTASTY RIRSKRQRFF  240
LPSQYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441476.10.0PREDICTED: transcription factor bHLH51
TrEMBLA0A1S3B4A60.0A0A1S3B4A6_CUCME; transcription factor bHLH51
STRINGXP_008441476.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-43bHLH family protein