PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008056P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 458aa    MW: 51164.1 Da    PI: 4.7294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008056P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45e-4871332128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPt  elv++yLkkkv ++kl++  vi+e+diyk+ PwdLp k ++k+++ +wyfF++r++kya+g r nrat+ gyWk+tgkd++v+ 
  MELO3C008056P1   7 PPGFRFHPTHVELVMFYLKKKVMKRKLPT-GVISELDIYKYAPWDLPaKsCLKTGDLKWYFFCPRERKYASGARMNRATEFGYWKSTGKDRPVHY 100
                     89***************************.99**************96357888999************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++e+vg  ktL+f++g+apkg +tdWvmheyrl
  MELO3C008056P1 101 -EKEEVGQIKTLTFFRGKAPKGDQTDWVMHEYRL 133
                     .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-545156IPR003441NAC domain
PROSITE profilePS5100552.7976156IPR003441NAC domain
PfamPF023656.7E-247133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MWKRSPPPGF RFHPTHVELV MFYLKKKVMK RKLPTGVISE LDIYKYAPWD LPAKSCLKTG  60
DLKWYFFCPR ERKYASGARM NRATEFGYWK STGKDRPVHY EKEEVGQIKT LTFFRGKAPK  120
GDQTDWVMHE YRLDDKNLSL EDVAQDAYVL CVIFQKDGPG PRNGAQYGAP FKEEDWEEDG  180
LEEVDSLEVD LPSGLPVLPN KEPLNSFAPD SSLTQTNVFG CSSASCISEN VASNSKEIPP  240
IASGNIASVE IPGNCNIPDD IFTIEDFFPE HGNVNLVDAN AFQAPVGAPI HTDQVDTIFK  300
DLEDLGGLSP LKGDENAYET GHEVYSSEPT FSFNNKTMSC LDHREYLEMN DLNVPLSSTY  360
RDRQKVNAPY SGSSIIEQPC FPYSSFGAAA NQNVPSCQYP SLYHSNDQIC HPADLDTLMH  420
TSASIQSAWV QENFHPNANA GCNGYKAPWL DHDANLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42715616168Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12532KKVMKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441051.10.0PREDICTED: NAC domain-containing protein 82
TrEMBLA0A1S3B3A90.0A0A1S3B3A9_CUCME; NAC domain-containing protein 82
STRINGXP_008441051.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-83NAC domain containing protein 103