PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007877P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SRS | ||||||||
Protein Properties | Length: 329aa MW: 35599 Da PI: 7.411 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 230.1 | 4e-71 | 103 | 258 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq++laa+++++ +++ ++++kr+r ++s+l++t MELO3C007877P1 103 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQqqlqlhgGDNNPKRHR---DYNSSSLACTL 194 5789****************************************************9988877776777554444445555...569999***** PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++ le+ ++P+e++s+avfrcvrvss dd ++++aYqtav+igGhvfkGiLydqG+e+ MELO3C007877P1 195 IPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTAVNIGGHVFKGILYDQGPEN 258 **************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.7E-67 | 105 | 257 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-27 | 107 | 149 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-27 | 209 | 256 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSGFFTLGGG GGGREEEQNN NRPNQFIHPP PDSSLFWYKA GNVELWQQQQ QHHHHHQEQP 60 LFQTQSRTTT TTTPYSAPLT VRNSDESSSR SGNFMMISSG SGGGGISCQD CGNQAKKDCS 120 HMRCRTCCKS RGFHCETHVK STWVPAAKRR ERQDKLAALQ THHHHQQQQL QLHGGDNNPK 180 RHRDYNSSSL ACTLIPTNNN TSGLEIGNFP AELNSPAVFR CVRVSSADDT DDQYAYQTAV 240 NIGGHVFKGI LYDQGPENNY IPPGETSSGG GGSSSGVQPL NFITGAADTT TGSGGSTAAL 300 PLLDPSSLYS TPLNSFMAGT QFFLPPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440782.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 3e-82 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A1S3B2J6 | 0.0 | A0A1S3B2J6_CUCME; protein SHI RELATED SEQUENCE 1 | ||||
STRING | XP_008440782.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 3e-71 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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