PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C007769P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 350aa MW: 38393.7 Da PI: 5.3943 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.2e-21 | 156 | 205 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g MELO3C007769P1 156 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRG 205 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.63E-33 | 155 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 156 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 156 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 156 | 214 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-37 | 156 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 157 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 157 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 179 | 195 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MAAAIDVYSG TSTPVYYSDP FSEELMKALQ PFMKSAISTS SSSSSSSYSP SPPPHPSVSS 60 QPRLIPDFCS PSSTRLFSQG FSGIEQMGFE QSGPIGLNNP TPSQILQIQA QIQLPSPTMS 120 SFSSSSSSFQ SQYHNFLTPK SFPMKHIGSP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR 180 LWLGTFDTAE EAALAYDQAA YKLRGDFARL NFPHLKHQFG DFKPLHPSVD AKLQSICQSL 240 KQGKTEVCSV EDEKPTTIPL PSESNSAVNN FWEPELKSEV ETSFSSSSSS PSRSEDYSTS 300 TGSSPDSSIS FLDFSDSQWG EGVEAFCLEK FPSIEIDWAA LSQLAESEC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 155 | 213 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440612.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A1S3B297 | 0.0 | A0A1S3B297_CUCME; ethylene-responsive transcription factor ERF060 | ||||
STRING | XP_008440612.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39780.1 | 9e-47 | ERF family protein |