PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007736P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 36897.6 Da PI: 4.569 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.2e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k MELO3C007736P1 57 KKRRLSVDQVKALEKTFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.9 | 8.8e-41 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk++ ++L++++++L +e+ke MELO3C007736P1 56 EKKRRLSVDQVKALEKTFEIENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYESLKRSFDTLQQDNDALLKEIKE 148 69*************************************************************************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-19 | 40 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.4E-19 | 55 | 116 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.989 | 56 | 112 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-16 | 57 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.02E-17 | 57 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.3E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-16 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MKRHGSSDSL GALMSVCPTS EEQSPRNSHV YGREFQSMLD GLDEEGSIEE HCHVGEKKRR 60 LSVDQVKALE KTFEIENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGL 120 LKANYESLKR SFDTLQQDND ALLKEIKELK SKLEEEKTES NLSVKEEIFV SESDNLLIEQ 180 TTNHLPVDHI SLPVASDHSD DFDYESFRTV GADDGDDQRV EVSLFPDFKD GSSDSDSSAI 240 LNEDNSPNAV VSSATAGMLQ SHHQILSSPA TSLNCFPFQK ATYNNAQQFV KIEEHNFFSG 300 EETCNLFSDE QAPSMHWYCP DQWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRARWKTKQ |
2 | 125 | 130 | ESLKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440572.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 4e-79 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A1S3B264 | 0.0 | A0A1S3B264_CUCME; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_008440572.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-73 | homeobox protein 6 |
Publications ? help Back to Top | |||
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