PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007694P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 342aa MW: 38091.6 Da PI: 4.5456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007694P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	172	215	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L MELO3C007694P2 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-15	169	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-9	172	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-11	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-15	173	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.13E-5	173	219	No hit	No description
CDD	cd04873	0.00302	266	307	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFSSFD ENPQMGSSTF PNFPTIQTAN 60 DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG 120 FMESETAPSV CKVEMEQMGV REINGSIMGI AELGKRSSNK AKKIEGQPSK NLMAERRRRK 180 RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEETGLD SNHVGLFNGI 240 SNEGKSNEVQ VRNSPKFDVE RKEKETRIDI CCATRPGLLL STVNTLEALG LEIQQCVISC 300 FNDFSMQASC AEQGSAQKAV ASSDDIKDAL FRNAGYGGKC L*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFSSFD ENPQMGSSTF PNFPTIQTAN  60
DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG  120
FMESETAPSV CKVEMEQMGV REINGSIMGI AELGKRSSNK AKKIEGQPSK NLMAERRRRK  180
RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEETGLD SNHVGLFNGI  240
SNEGKSNEVQ VRNSPKFDVE RKEKETRIDI CCATRPGLLL STVNTLEALG LEIQQCVISC  300
FNDFSMQASC AEQGSAQKAV ASSDDIKDAL FRNAGYGGKC L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	181	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440500.1	0.0	PREDICTED: transcription factor bHLH93 isoform X1
Refseq	XP_016899308.1	0.0	PREDICTED: transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	6e-80	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1S3B204	0.0	A0A1S3B204_CUCME; transcription factor bHLH93 isoform X1
STRING	XP_008440500.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-82	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]