PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007694P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 341aa    MW: 37963.5 Da    PI: 4.5456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007694P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11172215654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  MELO3C007694P1 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-15169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9172215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-5173219No hitNo description
CDDcd048730.00301266307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFSSFD ENPQMGSSTF PNFPTIQTAN  60
DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG  120
FMESETAPSV CKVEMEQMGV REINGSIMGI AELGKRSSNK AKKIEGQPSK NLMAERRRRK  180
RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEETGLD SNHVGLFNGI  240
SNEGKSNEVQ VRNSPKFDVE RKEKETRIDI CCATRPGLLL STVNTLEALG LEIQQCVISC  300
FNDFSMQASC AEGSAQKAVA SSDDIKDALF RNAGYGGKCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440501.10.0PREDICTED: transcription factor bHLH93 isoform X2
SwissprotQ9LSL18e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S3B0U80.0A0A1S3B0U8_CUCME; transcription factor bHLH93 isoform X2
STRINGXP_008440500.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]